## Combinatorial Pattern Matching: ... Annual SymposiumSpringer-Verlag, 2005 - Combinatorial analysis |

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Page 124

Left : Two inversions around the origin of replication inverting the same

Left : Two inversions around the origin of replication inverting the same

**gene**i can be replaced by two inversions around the terminus , both not changing**gene**i . Right : Two inversions ( one around the origin and the other around the ...Page 141

The data in every chromosome is presented as a table containing columns :

The data in every chromosome is presented as a table containing columns :

**Gene**name , rat coords , human coords , rat coding length ... There were 25,422**genes**predicted by SLAM , each**gene**appears exactly once in each of the genomes .Page 201

**Gene**structure prediction is one of the most important problems in computational molecular biology . A combinatorial approach to the problem , denoted**Gene**Prediction via Spliced Alignment , was introduced by Gelfand , Mironov and ...### What people are saying - Write a review

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### Contents

Sharper Upper and Lower Bounds for an Approximation Scheme | 1 |

Text Indexing with Errors | 21 |

Succinct Suffix Arrays Based on RunLength Encoding | 45 |

Copyright | |

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### Common terms and phrases

algorithm alignment alphabet appear applications approximate assume automaton bits blocks bound called character column common complexity compressed compute consider consists construction contains corresponding data structure defined Definition denote described distance edges edit efficient encoding errors example exists expression extended Figure function gene genome give given graph input instance integer interval label Lemma length linear mass matching maximal method minimal motif multiset node Note obtained occurrences optimal pair path pattern points position possible PQ tree prefix present probability problem procedure programming Proof reduce regular relations represent respectively running Science score sequences similar solution solved space step stored string structure substring suffix suffix array suffix tree symbols takes Theorem tree University vertex weight