Combinatorial Pattern Matching: ... Annual SymposiumSpringer-Verlag, 2005 - Combinatorial analysis |
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Page 27
... exists an ordered edit sequence such that minpref ,, t , ( t ) ≤ hi − 1 + 1 , where for all 0 ≤ j ≤ i , t ; = op ; ( · · · op1 ( t ) ) are the edit stages , then there is a leaf x labeled ( id ,, l ) in et ; ( S ) p . In other words ...
... exists an ordered edit sequence such that minpref ,, t , ( t ) ≤ hi − 1 + 1 , where for all 0 ≤ j ≤ i , t ; = op ; ( · · · op1 ( t ) ) are the edit stages , then there is a leaf x labeled ( id ,, l ) in et ; ( S ) p . In other words ...
Page 153
... exists Pa € [ 0 , n3 + n2 − | 9a | ] such that w 。= ( - ) oa 9a ( − ) n3 + n2- \ 9a \ -Pa ̧ - = = Assume g1 = 92 and let us show that X1 X2 . Notice that Xa { x € [ 1 , n ] : w 。[ 87 ] = # } , so X。 is completely determined by wa ...
... exists Pa € [ 0 , n3 + n2 − | 9a | ] such that w 。= ( - ) oa 9a ( − ) n3 + n2- \ 9a \ -Pa ̧ - = = Assume g1 = 92 and let us show that X1 X2 . Notice that Xa { x € [ 1 , n ] : w 。[ 87 ] = # } , so X。 is completely determined by wa ...
Page 180
... exists no word w such that BWT ( w ) = u . 3 An Extension of the BWT to k Words In a recent paper ( [ 4 ] ) , Crochemore , Désarménien and Perrin remarked that the Burrows - Wheeler transform is closely related to a special case of a ...
... exists no word w such that BWT ( w ) = u . 3 An Extension of the BWT to k Words In a recent paper ( [ 4 ] ) , Crochemore , Désarménien and Perrin remarked that the Burrows - Wheeler transform is closely related to a special case of a ...
Contents
Sharper Upper and Lower Bounds for an Approximation Scheme | 1 |
Text Indexing with Errors | 21 |
Succinct Suffix Arrays Based on RunLength Encoding | 45 |
Copyright | |
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algorithm alignment alphabet Apostolico approximate automaton Bioinformatics bits bound breakpoint Burrows-Wheeler transform c-token character column complexity Computer Science consensus PQ tree consider constraints construction Corasick corresponding Crochemore data structure defined Definition denote DFTDP DIST DNA sequences dynamic programming edges edit distance efficient encoding errors example exons function gene genome given graph Hamming distance implementation input integer interval label Lemma length linear LNCS mass matching problem Max-SNP maximal median minimal consensus PQ mismatches motif multiset node O(n log obtained occurrences optimal output p₁ pair Parsing path pattern matching peak permutations polynomial position PQ tree prefix prefix-free preprocessing Proc Proof protein regular expression rigid subsequence S₁ score Section shift distance space spin images Springer-Verlag string matching substring suffix array suffix tree term tree Theorem trie variable vector vertex WDWG words