Combinatorial Pattern Matching: ... Annual SymposiumSpringer-Verlag, 2005 - Combinatorial analysis |
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Page 15
... column . Therefore , our modification will not reduce the consensus column at such a block . If none of s ; and s , is bab , then there are only the following four cases ( A ) , ( B ) , ( C ) , and ( D ) . Sj : Si : ccaaa ccaaa ccaba ...
... column . Therefore , our modification will not reduce the consensus column at such a block . If none of s ; and s , is bab , then there are only the following four cases ( A ) , ( B ) , ( C ) , and ( D ) . Sj : Si : ccaaa ccaaa ccaba ...
Page 107
... column that results from applying a to s . For example , if s is column 5 of table 1 , then the IS_MATCH_STATE predicate returns false , since cell D [ 5,5 ] is inactive . The EXTENDS_TO_MATCH_STATE , on the other hand , returns true ...
... column that results from applying a to s . For example , if s is column 5 of table 1 , then the IS_MATCH_STATE predicate returns false , since cell D [ 5,5 ] is inactive . The EXTENDS_TO_MATCH_STATE , on the other hand , returns true ...
Page 222
... column d of P. C1d is the consensus character for column d and has the highest possible score of any character in column d . From these definitions , given po we know the rank of Cid , C2d , ... Ckd , in column d but not the rank of C ...
... column d of P. C1d is the consensus character for column d and has the highest possible score of any character in column d . From these definitions , given po we know the rank of Cid , C2d , ... Ckd , in column d but not the rank of C ...
Contents
Sharper Upper and Lower Bounds for an Approximation Scheme | 1 |
Text Indexing with Errors | 21 |
Succinct Suffix Arrays Based on RunLength Encoding | 45 |
Copyright | |
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Common terms and phrases
algorithm alignment alphabet Apostolico approximate automaton Bioinformatics bits bound breakpoint Burrows-Wheeler transform c-token character column complexity Computer Science consensus PQ tree consider constraints construction Corasick corresponding Crochemore data structure defined Definition denote DFTDP DIST DNA sequences dynamic programming edges edit distance efficient encoding errors example exons function gene genome given graph Hamming distance implementation input integer interval label Lemma length linear LNCS mass matching problem Max-SNP maximal median minimal consensus PQ mismatches motif multiset node O(n log obtained occurrences optimal output p₁ pair Parsing path pattern matching peak permutations polynomial position PQ tree prefix prefix-free preprocessing Proc Proof protein regular expression rigid subsequence S₁ score Section shift distance space spin images Springer-Verlag string matching substring suffix array suffix tree term tree Theorem trie variable vector vertex WDWG words